April Garrett’s Bio381 Homepage

Computational Biology: Spring 2017

About Me:

I am an aspiring marine biologist and second year PhD student in Dr. Melissa Pespeni’s lab at the University of Vermont. Link to my UVM webpage.

Me in California during Fall 2016 field collections of the purple sea urchin, Strongylocentrotus purpuratus.

Link to my current CV.

R Presentation on SNPRelate Package: 04/19/2017

• Download Data File Here
• Code for Presentation Here

Homework:

• Assignment 1: Links and fun fact emailed to Nick
  
• Assignment 2
• Assignment 3: Beamer
  • Powerpoint
  • Beamer Slides RMarkdown File
  • Beamer PDF Slides
• Assignment 4: Data upload & Regular Expressions
  • Uploading Data in R
  • Regular Expressions
• Assignment 5: Working in R
  • Assignment
  • Notes
• Assignment 6
• Assignment 7: Finish function summaries & provide text files to Lauren
  • ‘list’ function
  • ‘pmax’ function
  • ‘var’ function
  • ‘xor’ function
  • ‘!=’ function
  • ‘abs’ function
  • ‘^’ function
  • ‘save’ function
  • ‘log10’ function
• Assignment 8: Models and plots in R
  • Assignment
  • Notes
• Assignment 9: Running models on own data & random dataset
  • Assignment
• Assignment 10: For loops
  • Assignment
• Assignment 11: Spatial analysis in R
  • Assignment/Notes

Notes:

• Intro to GitHub, RMarkdown, and Making Homepage
• Tools for Thinking Hypotheses Through on Paper (handwritten in notebook)
• Plain-text Files & RMarkdown & LaTeX
• R Markdown Demo Part 1
• R Markdown Demo Part 2
• Importing Data in R
• Data Structures in R Part 1
• Data Structures in R Part 2
• Subsetting in R
• Probability Distributions
• Working with Functions in R
• MyFunctions
• Sourcing Script
• Control Structures
• For Loops
• Function Template
• Randomization Tests
• Markov Models Part 1
• Markov Models Part 2
• Apply Functions
• Graphics Part 1
• Graphics Part 2
• Histograms in R